| Entry ID | Original Release date | Data summary | Entry Title | Citation Title | Authors |
|---|---|---|---|---|---|
| 52194 | 2024-05-20 | Chemical Shifts: 1 set |
INCENP-complex |
Bipartite binding interface recruiting HP1 to chromosomal passenger complex at inner centromeres
|
Ayako Furukawa, Jun-Ichi I Kurita, Kosuke Sako, Ryu-Suke S Nozawa, Toru Hirota, Yoshifumi Nishimura |
| 52192 | 2024-05-20 | Chemical Shifts: 1 set |
INCENP_33aa |
Bipartite binding interface recruiting HP1 to chromosomal passenger complex at inner centromeres
|
Ayako Furukawa, Jun-Ichi I Kurita, Kosuke Sako, Ryu-Suke S Nozawa, Toru Hirota, Yoshifumi Nishimura |
| 36546 | 2025-11-04 | Chemical Shifts: 1 set |
Solution structure of the PH domain from the Tfb1 subunit of fission yeast TFIIH |
Structural polymorphism of the PH domain in TFIIH.
|
Masahiko Okuda, Yoshifumi Nishimura |
| 51771 | 2023-06-30 | Chemical Shifts: 1 set |
CTADC region of NAP1 |
Dynamic solution structures of whole human NAP1 dimer bound to one and two histone H2A-H2B heterodimers obtained by integrative methods
|
Hideaki Ohtomo, Junichi Kurita, Mutsunori Ikeguchi, Noriyuki Kodera, Romain Amyot, Takashi Oda, Tsutomu Yamane, Yasuo Tsunaka, Yoshifumi Nishimura |
| 51777 | 2023-06-30 | Chemical Shifts: 1 set |
CTADN-H2AH2B complex |
Dynamic solution structures of whole human NAP1 dimer bound to one and two histone H2A-H2B heterodimers obtained by integrative methods
|
Hideaki Ohtomo, Junichi Kurita, Mutsunori Ikeguchi, Noriyuki Kodera, Romain Amyot, Takashi Oda, Tsutomu Yamane, Yasuo Tsunaka, Yoshifumi Nishimura |
| 51776 | 2023-06-30 | Chemical Shifts: 3 sets |
CTADN-R77EH2B complex |
Dynamic solution structures of whole human NAP1 dimer bound to one and two histone H2A-H2B heterodimers obtained by integrative methods
|
Hideaki Ohtomo, Junichi Kurita, Mutsunori Ikeguchi, Noriyuki Kodera, Romain Amyot, Takashi Oda, Tsutomu Yamane, Yasuo Tsunaka, Yoshifumi Nishimura |
| 51775 | 2023-06-30 | Chemical Shifts: 2 sets |
R77EH2B hetero dimer |
Dynamic solution structures of whole human NAP1 dimer bound to one and two histone H2A-H2B heterodimers obtained by integrative methods
|
Hideaki Ohtomo, Junichi Kurita, Mutsunori Ikeguchi, Noriyuki Kodera, Romain Amyot, Takashi Oda, Tsutomu Yamane, Yasuo Tsunaka, Yoshifumi Nishimura |
| 51774 | 2023-06-30 | Chemical Shifts: 2 sets |
H2AH2B |
Dynamic solution structures of whole human NAP1 dimer bound to one and two histone H2A-H2B heterodimers obtained by integrative methods
|
Hideaki Ohtomo, Junichi Kurita, Mutsunori Ikeguchi, Noriyuki Kodera, Romain Amyot, Takashi Oda, Tsutomu Yamane, Yasuo Tsunaka, Yoshifumi Nishimura |
| 51773 | 2023-06-30 | Chemical Shifts: 3 sets |
CTADC-H2AH2B complex |
Dynamic solution structures of whole human NAP1 dimer bound to one and two histone H2A-H2B heterodimers obtained by integrative methods
|
Hideaki Ohtomo, Junichi Kurita, Mutsunori Ikeguchi, Noriyuki Kodera, Romain Amyot, Takashi Oda, Tsutomu Yamane, Yasuo Tsunaka, Yoshifumi Nishimura |
| 51772 | 2023-06-30 | Chemical Shifts: 1 set |
CTADN region of NAP1 |
Dynamic solution structures of whole human NAP1 dimer bound to one and two histone H2A-H2B heterodimers obtained by integrative methods
|
Hideaki Ohtomo, Junichi Kurita, Mutsunori Ikeguchi, Noriyuki Kodera, Romain Amyot, Takashi Oda, Tsutomu Yamane, Yasuo Tsunaka, Yoshifumi Nishimura |
| 51178 | 2022-10-12 | Chemical Shifts: 25 sets |
Histone H2A and H2B tails within 112-bp DNA/pAID nucleosome |
FACT modulates the conformations of histone H2A and H2B N-terminal tails within nucleosomes
|
Hideaki Ohtomo, Yasuo Tsunaka, Yoshifumi Nishimura |
| 51177 | 2022-10-12 | Chemical Shifts: 4 sets |
Histone H2A and H2B tails within 112-bp hexasome |
FACT modulates the conformations of histone H2A and H2B N-terminal tails within nucleosomes
|
Hideaki Ohtomo, Yasuo Tsunaka, Yoshifumi Nishimura |
| 51140 | 2023-03-10 | Chemical Shifts: 8 sets |
H3 tail in 193-bp nucleosome |
H2A Ubiquitination Alters H3-tail Dynamics on Linker-DNA to Enhance H3K27 Methylation
|
Ayako Furukawa, Chen Davidovich, Haruhiko Ehara, Haruhiko Koseki, Hideaki Ohtomo, Marika Shibata, Masatoshi Wakamori, Michael Uckelmann, Nicholas J McKenzie, Shinsuke Ito, Shun-Ichi I Sekine, Takashi Umehara, Yasuo Tsunaka, Yoshifumi Nishimura |
| 51141 | 2023-03-10 | Chemical Shifts: 8 sets |
H3 tail in 145-bp nucleosome |
H2A Ubiquitination Alters H3-tail Dynamics on Linker-DNA to Enhance H3K27 Methylation
|
Ayako Furukawa, Chen Davidovich, Haruhiko Ehara, Haruhiko Koseki, Hideaki Ohtomo, Marika Shibata, Masatoshi Wakamori, Michael Uckelmann, Nicholas J McKenzie, Shinsuke Ito, Shun-Ichi I Sekine, Takashi Umehara, Yasuo Tsunaka, Yoshifumi Nishimura |
| 51142 | 2023-03-10 | Chemical Shifts: 2 sets |
H3 tail in 145-bp nucleosome |
H2A Ubiquitination Alters H3-tail Dynamics on Linker-DNA to Enhance H3K27 Methylation
|
Ayako Furukawa, Chen Davidovich, Haruhiko Ehara, Haruhiko Koseki, Hideaki Ohtomo, Marika Shibata, Masatoshi Wakamori, Michael Uckelmann, Nicholas J McKenzie, Shinsuke Ito, Shun-Ichi I Sekine, Takashi Umehara, Yasuo Tsunaka, Yoshifumi Nishimura |
| 51143 | 2023-03-10 | Chemical Shifts: 2 sets |
H3 tail in 193-bp nucleosome |
H2A Ubiquitination Alters H3-tail Dynamics on Linker-DNA to Enhance H3K27 Methylation
|
Ayako Furukawa, Chen Davidovich, Haruhiko Ehara, Haruhiko Koseki, Hideaki Ohtomo, Marika Shibata, Masatoshi Wakamori, Michael Uckelmann, Nicholas J McKenzie, Shinsuke Ito, Shun-Ichi I Sekine, Takashi Umehara, Yasuo Tsunaka, Yoshifumi Nishimura |
| 36406 | 2025-10-25 | Chemical Shifts: 1 set |
Solution structure of the complex between RNA polymerase subunit RPB6 and TFIIH p62 PH domain |
Three human RNA polymerases interact with TFIIH via a common RPB6 subunit.
|
Hidefumi Suzuki, Masahiko Okuda, Tetsufumi Suwa, Yoshifumi Nishimura, Yuki Yamaguchi |
| 50438 | 2021-06-30 | Chemical Shifts: 61 sets Heteronuclear NOE Values: 28 sets T1 Relaxation Values: 28 sets T2 Relaxation Values: 28 sets H Exchange Rates: 14 sets |
H2A and H2B tails in nucleosome |
The N-terminal tails of histones H2A and H2B adopt two distinct conformations in the nucleosome with contact and reduced contact to DNA.
|
Hideaki Ohtomo, Hidetoshi Kono, Hitoshi Kurumizaka, Jun-Ichi I Kurita, Masatoshi Wakamori, Shun Sakuraba, Takashi Umehara, Yasuhiro Arimura, Yasuo Tsunaka, Yoshifumi Nishimura, Zhenhai Li |
| 36340 | 2025-10-13 | Chemical Shifts: 1 set |
Solution structure of the tandem PH and BSD1 domains of TFIIH p62 |
Structural and dynamical insights into the PH domain of p62 in human TFIIH.
|
Jun-Ichi I Kurita, Masahiko Okuda, Mitsunori Ikeguchi, Toru Ekimoto, Yoshifumi Nishimura |
| 36261 | 2025-09-27 | Chemical Shifts: 1 set |
Solution structure of the chromodomain of yeast Eaf3 |
The Eaf3 chromodomain acts as a pH sensor for gene expression by altering its binding affinity for histone methylated-lysine residues.
|
Masahiko Okuda, Yoshifumi Nishimura |
| 27227 | 2018-10-09 | Chemical Shifts: 1 set |
Backbone 1H and 15N Chemical Shift Assignments for mSin3B |
A mimetic of the mSin3-binding helix of NRSF/REST ameliorates abnormal pain behavior in chronic pain models
|
Atsushi Yoshimori, Hirofumi Nakano, Hiroshi Ueda, Hiroyuki Kouji, Hiroyuki Neyama, Jun-Ichi I Kurita, Masaji Kasai, Tadashi Mishina, Yoshifumi Nishimura, Yuuka Hirao |
| 11609 | 2016-05-23 | Chemical Shifts: 2 sets |
Solution structure of the isolated histone H2A-H2B heterodimer |
Solution structure of the isolated histone H2A-H2B heterodimer
|
Aritaka Nagadoi, Hideaki Ohtomo, Hideaki Shimojo, Jun-ichi Kurita, Masahiko Sato, Mitsunori Ikeguchi, Tsutomu Yamane, Yoshifumi Nishimura, Yoshihito Moriwaki |
| 11604 | 2021-07-16 | Chemical Shifts: 1 set |
Solution structure of the chromodomain of HP1alpha with the N-terminal tail |
Extended string-like binding of the phosphorylated HP1? N-terminal tail to the lysine 9-methylated histone H3 tail
|
Akinori Kidera, Ayumi Kawaguchi, Hideaki Shimojo, Jun-Ichi Nakayama, Kei Moritsugu, Kyoko Hiragami-Hamada, Mamoru Sato, Nobuto Hashiguchi, Satoshi Omori, Takashi Oda, Yoshifumi Nishimura |
| 11606 | 2021-07-16 | Chemical Shifts: 2 sets |
Solution structure of the chromodomain of HP1a with the phosphorylated N-terminal tail complexed with H3K9me3 peptide |
Extended string-like binding of the phosphorylated HP1? N-terminal tail to the lysine 9-methylated histone H3 tail
|
Akinori Kidera, Ayumi Kawaguchi, Hideaki Shimojo, Jun-Ichi Nakayama, Kei Moritsugu, Kyoko Hiragami-Hamada, Mamoru Sato, Nobuto Hashiguchi, Satoshi Omori, Takashi Oda, Yoshifumi Nishimura |
| 11605 | 2021-07-16 | Chemical Shifts: 1 set |
Solution structure of the chromodomain of HP1alpha with the phosphorylated N-terminal tail |
Extended string-like binding of the phosphorylated HP1? N-terminal tail to the lysine 9-methylated histone H3 tail
|
Akinori Kidera, Ayumi Kawaguchi, Hideaki Shimojo, Jun-Ichi Nakayama, Kei Moritsugu, Kyoko Hiragami-Hamada, Mamoru Sato, Nobuto Hashiguchi, Satoshi Omori, Takashi Oda, Yoshifumi Nishimura |
| 11594 | 2016-02-15 | Chemical Shifts: 2 sets |
Solution structure of the complex between XPC acidic domain and TFIIH p62 PH domain |
Structural Insight into the Mechanism of TFIIH Recognition by the Acidic String of the Nucleotide Excision Repair Factor XPC
|
Erina Kakumu, Kaoru Sugasawa, Masahiko Okuda, Minoru Kinoshita, Yoshifumi Nishimura |
| 11578 | 2017-08-11 | Chemical Shifts: 2 sets |
Solution structure of the complex between p53 transactivation domain 2 and TFIIH p62 PH domain |
Extended String Binding Mode of the Phosphorylated Transactivation Domain of Tumor Suppressor p53
|
Masahiko Okuda, Yoshifumi Nishimura |
| 11497 | 2012-08-27 | Chemical Shifts: 1 set |
Solution structure of the chromodomain of Swi6 |
Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
|
Aki Hayashi, Hideaki Shimojo, Jun-ichi Nakayama, Koichi Uegaki, Mayumi Ishida, Rika Kawaguchi, Yasuko Ohtani, Yoshifumi Nishimura |
| 11496 | 2012-08-27 | Chemical Shifts: 2 sets |
Solution structure of the chromodomain of Chp1 in complex with H3K9me3 peptide |
Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
|
Aki Hayashi, Hideaki Shimojo, Jun-ichi Nakayama, Koichi Uegaki, Mayumi Ishida, Rika Kawaguchi, Yasuko Ohtani, Yoshifumi Nishimura |
| 11032 | 2008-04-16 | Chemical Shifts: 1 set |
Solution structure of the knotted tudor domain of the yeast histone acetyltransferase protein, Esa1 |
Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
|
Hideaki Shimojo, Masahiko Okuda, Masami Horikoshi, Norihiko Sano, Yoshifumi Nishimura, Yoshihito Moriwaki |
| 11033 | 2008-04-16 | Chemical Shifts: 1 set |
Solution structure of the presumed chromodomain of the yeast histone acetyltransferase protein, Esa1 |
Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
|
Hideaki Shimojo, Masahiko Okuda, Masami Horikoshi, Norihiko Sano, Yoshifumi Nishimura, Yoshihito Moriwaki |
| 6749 | 2005-12-13 | Chemical Shifts: 1 set |
Solution structure of the NRSF/REST-mSin3B PAH1 complex |
The Neural Repressor NRSF/REST Binds the PAH1 Domain of the Sin3 Corepressor by Using its Distinct Short Hydrophobic Helix.
|
Hiroko Uda-Tochio, Kiyohito Murai, Mitsuru Nomura, Nozomu Mori, Yoshifumi Nishimura |