EDU.bmrb.rtfgen
Class rtf

java.lang.Object
  |
  +--EDU.bmrb.rtfgen.rtf

public class rtf
extends java.lang.Object

RTF constants.


Field Summary
static java.lang.String[] aalabels
          amino-acid labels (3-letter)
static java.lang.String[] aasymbols
          amino-acid labels (1-letter)
static java.lang.String cd
          C-delta
static java.lang.String cd1
          C-delta 1
static java.lang.String cd2
          C-delta 2
static java.lang.String ce
          C-epsilon
static java.lang.String ce1
          C-epsilon 1
static java.lang.String ce2
          C-epsilon 2
static java.lang.String ce3
          C-epsilon 3
static java.lang.String cg
          C-gamma
static java.lang.String cg1
          C-gamma 1
static java.lang.String cg2
          C-gamma 2
static java.lang.String ch2
          C-eta 2
static java.lang.String cz
          C-zeta
static java.lang.String cz2
          C-zeta 2
static java.lang.String cz3
          C-zeta 3
static java.lang.String emptyrow
          empty row
static java.lang.String fileheader
          file header
static java.lang.String filetail
          end of file
static java.lang.String nd1
          N-delta 1
static java.lang.String nd2
          N-delta 2
static java.lang.String ne
          N-epsilon
static java.lang.String ne1
          N-epsilon 1
static java.lang.String ne2
          N-epsilon 2
static java.lang.String nh1
          N-eta 1
static java.lang.String nh2
          N-eta 2
static java.lang.String nz
          N-zeta
static java.lang.String rowheader
          row header
static java.lang.String rowtail
          end of row
static java.lang.String tableheader
          table header
static java.lang.String tabletitle
          table title -- start
static java.lang.String tabletitletail
          table title -- end
 
Constructor Summary
rtf()
           
 
Method Summary
static java.lang.String matchAA(java.lang.String label)
          converts 3-letter amino-acid label to 1-letter label.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

fileheader

public static final java.lang.String fileheader
file header

tabletitle

public static final java.lang.String tabletitle
table title -- start

tabletitletail

public static final java.lang.String tabletitletail
table title -- end

tableheader

public static final java.lang.String tableheader
table header

rowheader

public static final java.lang.String rowheader
row header

emptyrow

public static final java.lang.String emptyrow
empty row

rowtail

public static final java.lang.String rowtail
end of row

filetail

public static final java.lang.String filetail
end of file

cg

public static final java.lang.String cg
C-gamma

cg1

public static final java.lang.String cg1
C-gamma 1

cg2

public static final java.lang.String cg2
C-gamma 2

cd

public static final java.lang.String cd
C-delta

cd1

public static final java.lang.String cd1
C-delta 1

cd2

public static final java.lang.String cd2
C-delta 2

ce

public static final java.lang.String ce
C-epsilon

ce1

public static final java.lang.String ce1
C-epsilon 1

ce2

public static final java.lang.String ce2
C-epsilon 2

ce3

public static final java.lang.String ce3
C-epsilon 3

ch2

public static final java.lang.String ch2
C-eta 2

cz

public static final java.lang.String cz
C-zeta

cz2

public static final java.lang.String cz2
C-zeta 2

cz3

public static final java.lang.String cz3
C-zeta 3

nd1

public static final java.lang.String nd1
N-delta 1

nd2

public static final java.lang.String nd2
N-delta 2

ne

public static final java.lang.String ne
N-epsilon

ne1

public static final java.lang.String ne1
N-epsilon 1

ne2

public static final java.lang.String ne2
N-epsilon 2

nh1

public static final java.lang.String nh1
N-eta 1

nh2

public static final java.lang.String nh2
N-eta 2

nz

public static final java.lang.String nz
N-zeta

aalabels

public static final java.lang.String[] aalabels
amino-acid labels (3-letter)

aasymbols

public static final java.lang.String[] aasymbols
amino-acid labels (1-letter)
Constructor Detail

rtf

public rtf()
Method Detail

matchAA

public static java.lang.String matchAA(java.lang.String label)
converts 3-letter amino-acid label to 1-letter label.
Parameters:
label - 3-letter label
Returns:
1-leter label