BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB RNA Entries

listed by the number of 1H chemical shifts in descending order


Number of entries returned: 337

Query grid description

Retrieve entries as a: Compressed file


Query result listed by the number of 1H chemical shifts in descending order:

Accession number
System name
1H shifts
13C shifts
15N shifts
31P shifts
Protein
DNA
RNA
25043
Most two C-terminal RNA Recognition Motif Domain of hnRNP L bound to two equivalents ACACA RNA
1276
700
223
0
X
 
X
19290
NMR structure of human TDP-43 tandem RRMs in complex with UG-rich RNA
1155
864
182
11
X
 
X
4867
NUCLEOLIN RBD12/RNA COMPLEX
1144
628
192
0
X
 
X
19609
Protein-RNA Ternary Complex
987
575
184
0
X
 
X
25188
YTH Domain of YT521-B in complex with N6-Methyladenosine containing RNA
966
683
155
0
X
 
X
19776
CPEB4RRM12 in complex with RNA
955
521
177
0
X
 
X
25652
PTBRRM1-SL23H complex
869
535
119
0
X
 
X
4345
L30-MRNA COMPLEX
861
648
138
0
X
 
X
19726
GLD-1 KH-QUA2 bound to 5'-CUACUCAUAU-3'
856
386
144
0
X
 
X
25855
Zipcode-binding-protein-1 KH3(DD)KH4 domains in complex with the RNA target UCGGACU
751
403
0
0
X
 
X
25854
Zipcode-binding-protein-1 KH3KH4(DD) domains in complex with the RNA target CACACCC
751
403
0
0
X
 
X
25831
complex of microRNA 20b pre-element with Rbfox RRM
746
566
115
0
X
 
X
17623
Model of human U2AF65 tandem RRM1 and RRM2 domains with eight-site uridine binding
742
375
184
0
X
 
X
17273
human PIWI-like 1 PAZ domain with ssRNA (5'-pUGACA)
738
456
138
0
X
 
X
25042
Second RNA Recognition Motif Domain of hnRNP L bound to ACACAC RNA
738
419
134
0
X
 
X
25571
HIV-1 Core Packaging Signal
695
0
0
0
 
 
X
19778
CPEB1RRM12 in complex with RNA
692
373
194
0
X
 
X
6094
Psi site of MLV
683
578
35
0
 
 
X
4894
MATERNAL EFFECT PROTEIN (STAUFEN)/RNA COMPLEX
681
345
93
4
X
 
X
34057
CUGBP Elav-like family member 2/RNA Complex
673
335
114
0
X
 
X
18534
Ribonuclease III in complex with RNA (32-MER)
672
487
90
0
X
 
X
25436
hnRNP C RRM in complex with the 5'-AUUUUUC-3' RNA
664
464
117
0
X
 
X
11408
CUG-BP- and ETR-3-like factor 1/RNA Complex
653
463
118
0
X
 
X
25469
hnRNP C RRM in complex with 5'-UUUUC-3' RNA
651
428
117
0
X
 
X
25041
First RNA Recognition Motif Domain of hnRNP L bound to CACACA RNA
613
363
102
0
X
 
X
19382
hnRNP G RRM in complex with the RNA 5'-AUCAAA-3'
604
293
97
0
X
 
X
16194
hnRNP F/AGGGAU G-tract RNA complex
598
283
114
0
X
 
X
17706
SRSF2
594
246
100
0
X
 
X
16192
hnRNP F/AGGGAU G-tract RNA complex
593
258
102
0
X
 
X
16193
hnRNP F/AGGGAU G-tract RNA complex
586
357
97
0
X
 
X
17707
SRSF2_RRM/RNA complex
583
268
97
0
X
 
X
17526
NusB/BoxA RNA
572
427
135
0
X
 
X
18846
SUP-12
570
430
99
0
X
 
X
16920
Tra2beta1 RRM in complex with AAGAAC RNA
569
280
92
0
X
 
X
11409
cDNA FLJ40872 fis, clone TUTER2000283, highly similar to Homo sapiens transformer-2-beta (SFRS10) gene
562
409
96
0
X
 
X
34080
hnRNP A1 RRM2 in complex with 5'-UCAGUU-3' RNA
560
293
92
0
X
 
X
19248
SRSF1 RRM2 in complex with the RNA 5'-UGAAGGAC-3'
558
271
89
0
X
 
X
19544
RsmZ(SL1)/RsmE(dimer) 2:1 complex
552
360
78
0
X
 
X
15113
NC:muPsi complex
551
88
0
0
X
 
X
16230
U6 snRNP (small fragment)
544
367
91
0
X
 
X
19548
RsmZ(SL4)/RsmE(dimer) 2:1 complex
543
355
81
0
X
 
X
11541
Protein-RNA Complex
538
317
97
0
X
 
X
19547
RsmZ(SL3)/RsmE(dimer) 2:1 complex
533
346
76
0
X
 
X
15257
RsmE dimer with two RNA stem loops
531
340
77
0
X
 
X
19546
RsmZ(SL2)/RsmE(dimer) 2:1 complex
528
346
78
0
X
 
X
11450
RNA-binding protein Musashi homolog 1
525
386
90
0
X
 
X
7194
TFIIIA zf46 & 5S rRNA complex
525
297
97
0
X
 
X
25655
II-III-VI three-way junction from the VS ribozyme in complex with MAGNESIUM
511
394
51
0
 
 
X
25654
II-III-VI three-way junction from the VS ribozyme
511
394
51
0
 
 
X
6956
PROTEIN/RNA Complex
505
352
83
0
X
 
X
6922
Vts1:RNA dimer
495
399
89
0
X
 
X
6895
PROTEIN/RNA Complex
486
234
84
0
X
 
X
16425
rna15, hrp1, anchor RNA 3' processing ternary complex
472
280
88
0
X
 
X
30210
Muscleblind-like protein 1/RNA Complex
472
300
85
0
X
 
X
19634
CR4/5 domain of medaka telomerase RNA
463
335
65
0
 
 
X
6005
TIS11d TZF/ 5'-UUAUUUAUU-3' complex
443
282
70
0
X
 
X
19549
RsmZ(36-44)/RsmE(dimer) 2:1 complex
437
274
70
0
X
 
X
4781
SL2 stem loop RNA from HIV-1
436
272
58
0
X
 
X
18702
RNA BINDING PROTEIN Solution structure of the third KH domain of KSRP in complex with the G-rich target sequence.
431
235
0
0
X
 
X
19040
2'-5' AG1 lariat forming ribozyme
430
347
12
0
 
 
X
17883
Lin28-ZnF domains bound to AGGAGAU of pre-let-7 miRNA
418
191
64
0
X
 
X
26842
TMR-3_48nt-5-TAMRA
415
382
157
3
 
 
X
15543
rna bound nelfe-rrm
412
224
91
0
X
 
X
17504
RNA Duplex-Quadruplex Junction Complex with FMRP RGG peptide
410
0
0
0
X
 
X
17316
T box riboswitch Specifier domain and GA motif
408
347
18
0
 
 
X
30046
Cyclic peptide mimetic of HIV-1 Tat/RNA Complex
375
162
0
0
X
 
X
30051
Cyclic peptide mimetic of HIV-1 Tat/RNA Complex
375
162
0
0
X
 
X
30049
Cyclic peptide mimetic of Tat/RNA Complex
375
162
0
0
X
 
X
25800
Plasmodium falciparum SR1-RRM1 in complex with ACAUCA RNA
374
398
84
0
X
 
X
25164
three-way junction from the VS ribozyme
368
286
39
0
 
 
X
25163
three-way junction from the VS ribozyme
368
286
39
0
 
 
X
17436
45-MER
363
76
0
0
 
 
X
6633
HIV-1 frameshift RNA signal
351
273
18
0
 
 
X
19698
preQ1 Class II riboswitch from Streptococcus pneumoniae
345
245
20
0
 
 
X
19260
RNA_(48-MER)
339
247
32
0
 
 
X
4120
TYMV pseudoknot
339
297
0
0
 
 
X
18503
RNA (49-MER)
338
234
64
0
 
 
X
6477
Telomerase RNA P2b-P3 pseudoknot
336
273
73
0
 
 
X
17106
36-MER, 7-DEAZA-7-AMINOMETHYL-GUANINE
319
229
67
0
 
 
X
16877
PROTEIN/RNA Complex
316
0
0
0
X
 
X
17188
35-MER
309
235
61
0
 
 
X
6543
HIV-1 frameshift inducing RNA
308
91
24
0
 
 
X
25661
rna-ligand complex
307
265
117
7
 
 
X
18893
d3'-hairpin of the group II intron Sc.ai5gamma including EBS1 bound to IBS1
306
78
13
0
 
 
X
15857
29-MER
306
77
13
0
 
 
X
6814
Class I RNA aptamer to GTP
295
0
0
0
 
 
X
30108
riboswitch (47-MER)
290
240
19
0
 
 
X
18881
d3'-hairpin from the Sc.ai5gamma group II intron including the EBS1:dIBS1 RNA:DNA hybrid
288
56
41
0
 
X
X
25784
CssA Thermometer from Neisseria meningitidis
287
31
26
0
 
 
X
17860
RNA (37-MER)
282
0
0
0
 
 
X
4226
lead-dependent ribozyme
278
206
92
0
 
 
X
18515
RNA (37-MER)
277
0
0
0
 
 
X
17861
RNA (37-MER)
277
0
0
0
 
 
X
26000
delta-J-delta-K domain of EMCV IRES
274
0
0
0
 
 
X
5773
HIV-1 STEM LOOP SL1 MONOMERIC RNA
272
237
0
0
 
 
X
30132
Telomerase RNA P2ab
272
206
37
0
 
 
X
6320
U6 extended ISL
272
189
14
0
 
 
X
5962
wildtype domain 5 of the ai5gamma group II intron
272
97
41
0
 
 
X
15869
single polyribonucleotide
272
270
47
29
 
 
X
6115
Rhonivirus CRE
268
0
0
0
 
 
X
6509
ScYLV RNA pseudoknot
263
217
96
28
 
 
X
19018
E. coli ribosomela decoding site with apramycin
262
256
101
27
 
 
X
5632
telomerase RNA p2b hairpin
262
201
25
0
 
 
X
4028
Sex-lethal protein
261
308
149
0
X
 
X
6076
stem-loop RNA
261
226
34
0
 
 
X
16941
47-MER
257
0
0
0
X
 
X
7314
L11 in complex with rRNA
256
350
136
0
X
 
X
15538
RNA apatamer
256
193
31
0
 
 
X
30026
5'-terminal hairpin of the 7SK snRNA
256
68
23
0
 
 
X
4346
L30 MRNA
255
193
24
0
 
 
X
5919
Loop E of 5S rRNA from spinach chloroplasts
253
110
20
0
 
 
X
26568
The structure of the SOLE element of oskar mRNA
251
213
38
30
 
 
X
15417
34mer_RNA
249
137
11
0
 
 
X
17941
IV-B_RNA
243
179
47
2
 
 
X
6652
GAAA tetraloop/Recptor homodimer
239
88
23
0
 
 
X
25052
Nucleocapsid protein p10 and RNA (68-MER)
238
0
0
0
X
 
X
6077
stem-loop RNA
237
89
0
0
 
 
X
16431
TAR-2Lig
236
172
57
0
X
 
X
6756
D6short
235
143
11
0
 
 
X
11014
TAR-TAR*GA aptamer kissing complex
235
176
9
0
 
 
X
30258
14-mer Peptide/RNA Complex
234
0
13
0
X
 
X
18847
stacked G-quadruplex formed by human TERRA sequence
232
0
0
0
 
 
X
17877
RNA (32-MER)
232
0
0
0
 
 
X
19692
Divalent Cations at the Active Site of the Neurospora VS Ribozyme
232
173
91
0
 
 
X
17292
26-MER
232
173
91
0
 
 
X
25781
CssA3 (top stem) of CssA thermometer
231
67
14
0
 
 
X
19662
I-V kissing-loop interaction of the Neurospora VS ribozyme
231
186
67
0
 
 
X
16852
siRNA construct
231
0
0
0
 
 
X
4816
INFLUENZA A VIRUS PROMOTER RNA
224
39
23
22
 
 
X
18894
d3'-hairpin including the exon binding site 1 (EBS1) of the group II intron Sc.ai5gamma
223
102
18
0
 
 
X
19039
domain 5 from Azotobacter vinelandii Intron 5
222
146
31
0
 
 
X
25101
tRNApro:MLV Nucleocapsid Protein (1:1) Complex
222
33
0
0
X
 
X
15856
29-MER
221
77
10
0
 
 
X
6485
GluR-B R/G RNA
221
184
0
0
 
 
X
4253
T2 RNA Pseudoknot
221
162
93
0
 
 
X
18532
RNA Aptamer for B. anthracis Ribosomal Protein S8
220
201
65
0
 
 
X
5528
RNA (25-MER):the complementary RNA promoter of influenza a virus
219
0
0
13
 
 
X
25100
pf tRNApro:MLV-Nucleocapsid (1:2) Complex
219
33
0
0
X
 
X
25780
CssA4 (bottom stem) of CssA thermometer
215
76
17
0
 
 
X
4750
CONSERVED MOTIF IN SRP RNA
214
0
0
0
 
 
X
5852
A mimic of the VS Ribozyme Hairpin Substrate
212
153
69
0
 
 
X
5371
U6 RNA
211
41
14
0
 
 
X
18336
RNA_(27-MER)
209
69
9
0
 
 
X
17083
65-MER
208
0
0
0
 
 
X
25526
RNA 27-MER, RIBOSTAMYCIN
205
180
27
8
 
 
X
16609
rna-ligand complex
205
180
27
9
 
 
X
25785
CssA5 (middle region) of CssA thermometer
204
32
18
0
 
 
X
5703
U6 snRNA intramolecular stem loop
204
66
0
1
 
 
X
5655
U80G U6 ISL RNA
203
138
15
0
 
 
X
5553
C4 promoter of influneza A virus
202
29
11
18
 
 
X
25060
dCDS1-RNA
199
179
70
0
X
 
X
16604
rna-ligand complex
198
174
26
0
 
 
X
6062
NRS23
198
153
15
17
 
 
X
30224
phage GA operator RNA hairpin
196
158
49
21
 
 
X
15745
HBV stem-loop alpha;
195
145
50
0
 
 
X
4125
RNAse P RNA_1
192
0
0
0
 
 
X
19545
cGCUUAg RNA Pentaloop from Bovine Enterovirus Vir404/03
190
132
17
0
 
 
X
7404
Human U64 H/ACA snoRNA
188
127
31
0
 
 
X
25999
St domain of EMCV IRES
188
164
0
0
 
 
X
18633
small molecule-influenza RNA complex
186
0
0
0
 
 
X
18549
Helix-35 Stem-loop from E. coli 23S rRNA
185
181
42
0
 
 
X
25049
RNA (68-MER)
185
148
27
0
 
 
X
25603
murine tumour necrosis factor alpha CDE RNA
185
148
33
21
 
 
X
26024
RNA (28-MER)
184
78
11
0
 
 
X
17671
RNA (27-MER)
184
141
16
0
 
 
X
18892
helix II template boundary element from Tetrahymena telomerase RNA
184
151
34
0
 
 
X
25777
Tetrahymena telomerase RNA pseudoknot
184
80
0
0
 
 
X
15859
29-MER
183
58
11
0
 
 
X
6239
VSVI RNA
183
139
1
0
 
 
X
17601
MLV readthrough pseudoknot
182
92
0
0
 
 
X
15571
RNA DUPLEX
182
124
0
17
 
 
X
18891
Tetrahymena telomerase RNA stem IV terminal loop
181
141
19
0
 
 
X
7098
RNA (35-MER)
181
137
11
0
 
 
X
25604
double base-pair inversion mutant of murine tumour necrosis factor alpha CDE-23 RNA
180
151
0
22
 
 
X
15786
edhbv
180
100
32
0
 
 
X
30257
pre-miR-21
180
129
0
0
 
 
X
15697
IRES domain IIId
179
0
0
0
 
 
X
19081
P4_CPEB3
179
0
0
0
 
 
X
10018
RNA hairpin of eel LINE
178
0
0
0
 
 
X
7403
telomerase_RNA_CR7
178
191
54
0
 
 
X
18593
RNA Duplex Containing a 2'-O-Pivaloyloxymethyl Modification
178
0
0
0
 
 
X
15080
Yeast U2 stem I
177
133
0
0
 
 
X
5007
VS RIBOZYME SUBSTRATE STEM-LOOP
177
107
16
0
 
 
X
17408
HIV TAR RNA
177
0
0
0
 
 
X
25998
K domain of EMCV IRES
176
167
0
0
 
 
X
5781
Propynyl_DNA.RNA_hybrid
175
0
0
0
 
X
X
4175
SL3 RNA hairpin
175
0
0
19
 
 
X
25826
microRNA 20b pre-element
175
153
0
0
 
 
X
5278
Pea Enation Mosaic Virus P1-P2 frameshifting pseudoknot
173
36
66
0
 
 
X
18950
3',5'-LINKED 2'-O-(2-METHOXYETHYL)-RNA DUPLEX
173
0
0
0
 
 
X
25671
HIV ISS element
172
0
0
0
 
 
X
6979
5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'/5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(PR5))-3'
168
0
0
18
 
 
X
4547
DNA/RNA
168
0
0
16
 
X
X
34171
RNA (5'-R(P*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')
166
147
0
0
 
 
X
19996
ROQ-Tnf
166
444
166
0
X
 
X
25416
RNA (39-MER), 3' splice site in influenza A: 39-nt hairpin
166
0
0
0
 
 
X
4745
Bulged RNA
164
0
0
0
 
 
X
5321
helix 6 of signal recognition particle RNA
164
0
0
0
 
 
X
18975
Unmodified Helix 69
160
128
0
0
 
 
X
18838
ID3 stem loop of domain 1 in the ai5gamma group II intron
158
132
0
0
 
 
X
5777
PODN:RNA
157
0
0
0
 
X
X
17682
RNA (31-MER)
157
39
8
0
 
 
X
17406
5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3'
156
24
8
20
 
 
X
7405
Human U85 C/D-H/ACA scaRNA
156
117
16
0
 
 
X
5834
HIV-1 frameshift inducing stem-loop RNA
155
59
31
0
 
 
X
18974
HELIX_69
155
46
0
0
 
 
X
6562
D-loop from cloverleaf 1 of bovine enterovirus 1 RNA
155
120
47
16
 
 
X
25997
J domain of EMCV IRES
154
143
0
0
 
 
X
11489
RNA aptamer against prion protein
153
0
0
0
X
 
X
25072
SXL-UNR-msl2-mRNA
152
130
152
0
X
 
X
5776
sPrODN1:RNA
152
0
0
0
 
X
X
7090
18 mer hairpin hexaloop
149
90
21
17
 
 
X
4250
3' hairpin of TYMV pseudoknot
149
0
0
0
 
 
X
15781
5'-R(*GP*UP*CP*GP*UP*GP*CP*UP*G)-3'
148
110
0
15
 
 
X
5775
5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3'/5'-D(*CP*CP*UP*CP*CP*UP*U)-3'
147
0
0
0
 
X
X
4247
8mer chimeric hybrid RNA/RNA-DNA duplex with tRNA-DNA junction
145
0
0
0
 
X
X
26588
ROQ-SELEX consensus hexa-loop RNA
145
0
130
0
X
 
X
26587
ROQ-Ox40hexa-loop RNA
144
296
144
0
X
 
X
17572
i6A37 tyrASL
143
101
24
0
 
 
X
25415
3' splice site influenza A: 19-nt duplex
140
0
0
14
 
 
X
5705
UUCG tetraloop
140
132
47
14
 
 
X
19534
non-coding RNA RsmZ acting as protein sponge: Conformer L of RsmZ(1-72)/RsmE(dimer) 1to3 complex
140
120
20
0
X
 
X
15656
Duck HBV apical loop
139
135
38
0
 
 
X
5170
Histone mRNA
139
128
14
0
 
 
X
17088
P6.1 hairpin
138
91
16
0
 
 
X
5932
DKC mutant P2b telomerase RNA
136
100
31
0
 
 
X
17520
Unmodified ASL_Tyr
136
116
41
16
 
 
X
7315
L11 in complex with rRNA
135
263
135
0
X
 
X
4780
SL2 stem loop RNA from HIV-1
134
106
0
0
 
 
X
30261
RNA (41-MER)
131
0
0
0
 
 
X
16244
U6 snRNP (fragment)
131
0
131
0
X
 
X
17449
tRNALys3UUU
131
0
0
0
 
 
X
16654
5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*(N)P*AP*UP*AP*CP*CP*CP*CP*GP*A)-3'
130
0
0
0
 
 
X
17535
DNA/RNA hybrid
130
36
0
16
 
X
X
4135
RNA duplex including the C-U mismatch
130
0
1
16
 
 
X
17972
U2/U6snRNA
130
80
0
0
 
 
X
7308
L11-RNA-thiostrepton complex
127
354
127
0
X
 
X
7307
L11-RNA complex
127
256
127
0
X
 
X
5256
Anticodon Stem-loop of tRNA(Phe)
126
110
16
17
 
 
X
16655
5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*CP*AP*UP*AP*CP*CP*CP*CP*GP*A)-3'
126
0
0
0
 
 
X
15915
5'-R(*GP*CP*GP*GP*UP*GP*UP*AP*AP*AP*AP*G)-3'
126
0
0
0
 
 
X
5530
5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC)P*UP*GP*G)-3'
124
0
0
0
 
 
X
15081
Human U2 Stem I
124
68
0
0
 
 
X
15342
(cmo5U34)-ASL Val3
124
0
0
0
 
 
X
17309
coronavirus stem-loop 2
123
35
0
4
 
 
X
15331
(cmo5U34 M6A37)-ASL Val3
122
0
0
0
 
 
X
5531
5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*(1MG)P*AP*UP*(5MC)P*UP*GP*G)-3'
121
0
0
0
 
 
X
19024
single G-bulge in a conserved regulatory region of the HEV genome
120
137
0
0
 
 
X
15362
(M6A37)-ASL Val3
120
0
0
0
 
 
X
16479
G-riboswitch terminator hairpin
119
90
0
0
 
 
X
15319
Unmodified ASLval3
117
0
0
0
 
 
X
15858
29-MER
117
36
0
0
 
 
X
5259
Anticodon Stem-loop of tRNA(Phe)
114
102
13
14
 
 
X
19873
D-arm of tRNA(Met)
110
94
0
0
 
 
X
30262
RNA (41-MER)
110
0
0
0
 
 
X
17563
glycyl-tRNA anticodon stem-loops
108
90
0
0
 
 
X
17564
Glycyl-tRNA(UCC)1B anticodon stem-loop
107
87
0
0
 
 
X
16951
5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
107
50
0
10
 
 
X
18239
RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*AP*UP*CP*UP*UP*C)-3')
105
0
0
15
 
 
X
11176
AML22
105
0
0
0
 
 
X
16714
AUCG tetraloop hairpin
104
104
30
13
 
 
X
7230
5'-R(*GP*GP*CP*UP*AP*AP*GP*AP*C)-3', 5'-R(*GP*UP*CP*GP*AP*AP*GP*CP*C)-3'
102
0
0
0
 
 
X
17565
Unmodified Glycyl-tRNA(UCC) anticodon stem-loop
101
82
0
0
 
 
X
17567
TASL2 (monomer)
101
77
0
0
 
 
X
19887
Oligonucleotide Model of the MiR-21 Pre-Element
100
0
0
0
 
 
X
11375
Tia1 protein
100
0
100
0
X
 
X
11407
CUG-BP- and ETR-3-like factor 1
100
0
100
0
X
 
X
11406
CUG-BP- and ETR-3-like factor 1
100
0
100
0
X
 
X
18240
Mutant of the sub-genomic promoter from Brome Mosaic Virus
100
0
0
14
 
 
X
11607
Reverse transcriptase recognition site of transcript of a LINE from Denio Renio, LS-1
97
33
0
0
 
 
X
25414
3' splice site influenza A: 11-nt hairpin
97
0
0
10
 
 
X
11374
Tia1 protein
96
0
96
0
X
 
X
16952
5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
95
29
5
10
 
 
X
5394
U2 snRNA - Intron duplex
95
0
0
0
 
 
X
17568
TASL3 (monomer)
94
82
0
0
 
 
X
34038
RNA (29-MER)
93
63
18
0
 
 
X
5395
Unmodified U2 snRNA - Intron duplex
93
0
0
0
 
 
X
25996
J-K region of EMCV IRES
90
0
0
0
 
 
X
18079
UNAC Tetraloops
90
0
0
0
 
 
X
5046
HCV IRES RNA DOMAIN IIIC
89
0
0
0
 
 
X
18036
UNAC Tetraloops
89
0
0
0
 
 
X
18034
UNAC Tetraloops
89
0
0
0
 
 
X
18035
UNAC Tetraloops
88
0
0
0
 
 
X
30268
RNA (5'-R(*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*A)-3')
88
0
0
13
 
 
X
15117
NS1A:dsRNA complex
88
235
87
0
X
 
X
19686
ASD-1+RNA
87
185
87
0
X
 
X
15572
RNA DUPLEX CONTAINING SINGLE ADENOSINE BULGE
87
57
0
10
 
 
X
16950
5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
85
29
4
10
 
 
X
11410
cDNA FLJ40872 fis, clone TUTER2000283, highly similar to Homo sapiens transformer-2-beta (SFRS10) gene
85
0
85
0
X
 
X
25220
RNA duplex
83
28
0
9
 
 
X
19064
TIAR RRM2
83
246
83
0
X
 
X
11411
cDNA FLJ40872 fis, clone TUTER2000283, highly similar to Homo sapiens transformer-2-beta (SFRS10) gene
82
0
82
0
X
 
X
16953
5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
81
19
0
8
 
 
X
17517
Anticodon Stem-loop of Bacillus subtilis tRNATYR
80
35
0
16
 
 
X
5588
5'-R(*GP*GP*CP*(P5P)P*(P5P)P*GP*CP*CP*U)-3'
80
0
0
8
 
 
X
11412
cDNA FLJ40872 fis, clone TUTER2000283, highly similar to Homo sapiens transformer-2-beta (SFRS10) gene
78
0
78
0
X
 
X
25291
RNA duplex
77
48
0
8
 
 
X
5587
5'-R(*GP*GP*CP*AP*(P5P)P*GP*CP*CP*U)-3'
77
0
0
8
 
 
X
5614
5'-R(*GP*GP*CP*AP*AP*GP*CP*CP*U)-3'
77
0
0
8
 
 
X
16980
5'-R(*CP*UP*AP*GP*UP*UP*AP*GP*CP*UP*AP*AP*CP*UP*AP*G)-3'
77
0
0
0
 
 
X
5586
5'-R(*GP*GP*CP*(P5P)P*AP*GP*CP*CP*U)-3'
77
0
0
8
 
 
X
17573
Anticodon Stem-loop (coi6y)
75
38
0
0
 
 
X
25669
self complementary Xylonucleic Acid duplex
74
72
0
7
 
 
X
18872
ID3 stem
73
59
0
0
 
 
X
15780
5'-R(*GP*UP*CP*GP*AP*GP*CP*UP*G)-3'
72
52
0
7
 
 
X
17566
TASL1
71
62
0
0
 
 
X
5980
IRES
71
0
0
0
 
 
X
30282
RNA (5'-R(*GP*AP*CP*CP*AP*GP*CP*AP*G)-3')
69
0
0
0
 
 
X
10014
helix6 in SRP RNA
64
0
0
0
 
 
X
25364
SLBP/RNA
62
148
62
0
X
 
X
17326
RP1
60
54
0
0
 
 
X
17559
FZL2 (monomer)
59
59
0
0
 
 
X
17560
FZL4 (monomer)
57
56
0
0
 
 
X
4614
5'-r(*GP*CP*AP*GP*GP*CP*GP*UP*GP*C)-3'
54
0
0
0
 
 
X
30283
RNA (5'-R(*GP*AP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*C)-3')
53
0
0
0
 
 
X
17401
5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3'
48
0
0
0
 
 
X
17961
U2U6111
45
0
29
0
 
 
X
26033
r(CGG) motif
42
0
0
0
 
 
X
26032
r(CGG) motif
38
0
0
0
 
 
X
17901
Spliceosome
36
17
12
0
 
 
X
25106
CAG RNA
33
0
0
0
 
 
X
17921
GAAA tetraloop monomer
32
0
22
0
 
 
X
17078
tRNALeu monomer
32
0
32
0
 
 
X
25811
core of the U4/U6 di-snRNA
30
5
25
0
 
 
X
25867
PKI domain of the honeybee dicistrovirus, Israeli acute paralysis virus (IAPV) IRES
29
0
29
0
 
 
X
15157
Duck HBV epsilon apical tetraloop
21
0
2
0
 
 
X
26939
ASH1-mRNA
16
0
0
0
 
 
X
5023
5'-R(*GP*GP*UP*GP*CP*UP*UP*AP*GP*CP*AP*CP*C)-3'
10
0
0
0
 
 
X
26938
ASH1-mRNA
10
0
0
0
 
 
X
5193
5'-R(*GP*GP*UP*GP*CP*AP*UP*GP*GP*CP*AP*CP*C)-3'
9
0
0
0
 
 
X
19400
The structure of the Box CD enzyme reveals regulation of rRNA methylation
0
0
0
0
X
 
X
27142
CUGBP2 RRM3 Y428A in complex with UUUAA RNA
0
0
0
0
X
 
X
27152
CUGBP2 RRM3 H429A in complex with UUUAA RNA
0
0
0
0
X
 
X
27153
CUGBP2 RRM3 F455A in complex with UUUAA RNA
0
0
0
0
X
 
X
27154
CUGBP2 RRM3 wild type in complex with UGUGU RNA
0
0
0
0
X
 
X
25534
26mer Box C/D RNA (5'-R(P*CP*UP*GP*AP*GP*CP*UP*CP*GP*AP*AP*AP*GP*AP*GP*CP*AP*AP*UP*GP*AP*UP*G)-3')
0
173
49
9
 
 
X
6042
30mer stemloop-D of coxsackieviral RNA
0
0
0
0
 
 
X

  Back to the initial grid   Top of this page