Tag category Entity_experimental_src
Key tags (columns):
Tags in table Entity_experimental_src:
| Tag | Description | data type | Mandatory |
|---|---|---|---|
| Citation_ID | Pointer to '_Citation.ID' | int | |
| Citation_label | Pointer to a save frame of the category 'citation.' The citation would describe how for example the vector was constructed and the host organism picked. | framecode | |
| Details | Additional information relevant to the data in the current save frame or to a specific data item is entered as a value to this tag. The information entered must supplement information already present. Whenever possible data should associated with specif | text | |
| Entity_chimera_segment_ID | Pointer to '_Entity_chimera_segment.ID' | int | |
| Entity_experimental_src_list_ID | Pointer to '_Entity_experimental_src_list.ID' | int | yes |
| Entity_ID | Pointer to '_Entity.ID' | int | yes |
| Entity_label | Pointer to a save frame of the category 'entity.' This is the label assigned to the molecular entity by the author when completing the molecular entity portion of the deposition. | framecode | yes |
| Entry_ID | Pointer to '_Entry.ID' | code | yes |
| Host_org_ATCC_number | Organism culture number defined in the American Type Culture Collection. | line | |
| Host_org_cell_line | The name for the cell line used in producing the biopolymer. | line | |
| Host_org_cell_type | Specific type of cell if used to produce the biopolymer. | line | |
| Host_org_cellular_location | Identifies the location inside (or outside) the cell which expressed the molecule. Proteins may be excreted from a production host or produced in the periplasmic space as opposed to the cytoplasm. | line | |
| Host_org_culture_collection | Culture collection of the expression system. | line | |
| Host_org_details | Additional information or comments regarding the host organism. | text | |
| Host_org_dev_stage | A string to indicate the life-cycle or cell development cycle in which the gene is expressed and the mature protein is active. | text | |
| Host_org_gene | Specific gene which expressed the molecule. | line | |
| Host_org_genus | Genus of the host organism | line | |
| Host_org_name_common | Common name for the organism used as a host in producing a biopolymer. | line | |
| Host_org_NCBI_taxonomy_ID | Unique ID assigned by the NCBI to organisms. | code | |
| Host_org_organ | Cell lines used as hosts in producing macromolecules often originate from a particular organ (e.g. chinese hamster ovary cells). If this is true for the system used in this study please enter the name of the organ that was the source for the cell line us | line | |
| Host_org_organelle | Specific organelle which expressed the molecule. | line | |
| Host_org_scientific_name | The scientific name of the organism that served as host for the production of the entity. | line | |
| Host_org_species | Scientific name for the species of the organism as defined by NCBI taxonomists whenever possible. | line | |
| Host_org_strain | The scientific name for the strain of an organism. | line | |
| Host_org_subvariant | In the hierarchy of organism nomenclature the name or code designating a subvariant of the organism used to express the entity. These may specific hosts designed with mutations to knock out proteases or other enzymes deleterious to the production of the | line | |
| Host_org_tissue | The tissue from an organism that is the natural or experimental source of the molecule. | line | |
| Host_org_tissue_fraction | The fraction of the tissue which expressed the molecule. | line | |
| Host_org_variant | Name used to classify the variant of an organism. | line | |
| ID | An integer value that uniquely identifies each experimental source in the list of experimental sources. | int | yes |
| PDBview_host_org_vector_name | The name of a vector used to insert a gene into a eukaryotic host to express the biopolymer used in the experiments. | line | |
| PDBview_plasmid_name | The name of a plasmid used in a bacterial system to generate the protein or nucleic acid used in the experiments. | line | |
| Production_method | The laboratory method used to obtain the biopolymers studied. | line | yes |
| Sf_ID | Pointer to '_Entity_experimental_src_list.Sf_ID' | int | yes |
| Vector_details | Text comments regarding the vector used to produce the biopolymer. | text | |
| Vector_name | Name given to the vector used to insert a gene into a host organism. | line | |
| Vector_type | The kind of biological object used to insert a gene into a host organism for the production of a biological molecule studied in the entry. | line | |
| Vendor_name | Commercial or academic vendor that supplied the defined item. | line | |