BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 5993

Title: 1H shifts for the DNA duplex containing 5-hydroxy Uracil lesion

Authors: Thiviyanathan, Varatharasa

Citation: Thiviyanathan, Varatharasa; Somasunderam, Anoma; Volk, David; Gorenstein, David. "5-hydroxyuracil can form stable base pairs with all four bases in a DNA duplex"  Chem. Commun. ., 400-402 (2005).

Assembly members:
DNA, polymer, 12 residues, 3647 Da.

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
DNA: CGCAAATTXGCG

Data sets:
  • assigned_chemical_shifts
Data typeCount
1H chemical shifts114

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1DNA chain A1
2DNA chain B1

Entities:

Entity 1, DNA chain A 12 residues - 3647 Da.

1   DCDGDCDADADADTDTchem_comp_1DG
2   DCDG

Samples:

sample_1: DNA 0.6 mM

cond_1: pH: 6.8; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D NOESYsample_1not availablecond_1
2D TOCSYsample_1not availablecond_1
31P HETCORsample_1not availablecond_1
DQF-COSYsample_1not availablecond_1

Software:

VNMR - NMR data processing

NMR spectrometers:

  • Varian UnityPlus 750 MHz
  • Varian UnityPlus 600 MHz

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