BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 4733

Title: HMG-D complexed to a bulge DNA: an NMR study

Authors: Cerdan, Rachel; Payet, Dominique; Yang, Ji-Chun; Travers, Andrew; Neuhaus, David

Citation: Cerdan, Rachel; Payet, Dominique; Yang, Ji-Chun; Travers, Andrew; Neuhaus, David. "HMG-D complexed to a bulge DNA: an NMR study"  Protein Sci. ., .-. (2000).

Assembly members:
bulge DNA 12/14mer, polymer, 14 residues, Formula weight is not available
bulge DNA 12/14mer, polymer, 12 residues, Formula weight is not available

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
bulge DNA 12/14mer: CGATATTAAGAGCC
bulge DNA 12/14mer: GGCTCAATATCG

Data sets:
Data typeCount
1H chemical shifts203

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1bulge DNA free 12/14mer strand 11
2bulge DNA free 12/14mer strand 22

Entities:

Entity 1, bulge DNA free 12/14mer strand 1 14 residues - Formula weight is not available

1   DCDGDADTDADTDTDADADG
2   DADGDCDC

Entity 2, bulge DNA free 12/14mer strand 2 12 residues - Formula weight is not available

1   DGDGDCDTDCDADADTDADT
2   DCDG

Samples:

sample_1: bulge DNA 12/14mer 1 mM; bulge DNA 12/14mer 1 mM

cond_1: ionic strength: 0.005 M; pH: 6.0; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
2D NOESYsample_1not availablecond_1
2D 1H-15N HSQCsample_1not availablecond_1
3D HNCAsample_1not availablecond_1
3D CBCA(CO)NHsample_1not availablecond_1

Software:

Xwin-NMR -

FELIX -

NMR spectrometers:

  • Bruker DMX 600 MHz
  • Bruker Avance 800 MHz

Related Database Links: