BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 18724

Title: FUC_TBA

Authors: Gomez-Pinto, Irene; Vengut-Climent, Empar; Lucas, Ricardo; Avi o, Anna; Eritja, Ramon; Gonzalez-Iba ez, Carlos; Morales, Juan Carlos

Citation: Gomez-Pinto, Irene; Vengut-Climent, Empar; Lucas, Ricardo; Avi o, Anna; Eritja, Ramon; Gonzalez Iba ez, Carlos; Morales, Juan Carlos. "Monosaccharide interactions with G-quadruplex DNA: induced-fit effect on thrombin-binding aptamer with sugars at the 5 -end"  J. Am. Chem. Soc. ., .-..

Assembly members:
G-quadruplex_DNA, polymer, 15 residues, 4743.092 Da.
ALPHA-L-FUCOSE, non-polymer, 164.156 Da.
1,2-ETHANEDIOL, non-polymer, 62.068 Da.

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
G-quadruplex_DNA: GGTTGGTGTGGTTGG

Data sets:
Data typeCount
1H chemical shifts183

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1G-quadruplex_DNA1
2ALPHA-L-FUCOSE2
31,2-ETHANEDIOL3

Entities:

Entity 1, G-quadruplex_DNA 15 residues - 4743.092 Da.

1   DGDGDTDTDGDGDTDGDTDG
2   DGDTDTDGDG

Entity 2, ALPHA-L-FUCOSE - C6 H12 O5 - 164.156 Da.

1   FUC

Entity 3, 1,2-ETHANEDIOL - C2 H6 O2 - 62.068 Da.

1   EDO

Samples:

sample_1: G-quadruplex_DNA 1 mM; ALPHA-L-FUCOSE 1 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 10 mM; pH: 7; pressure: 1 atm; temperature: 279.6 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H COSYsample_1isotropicsample_conditions_1

Software:

AMBER, Bruker Biospin, Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman, Goddard - chemical shift assignment, processing, refinement

NMR spectrometers:

  • Bruker Avance 600 MHz
  • Bruker Avance 800 MHz

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