BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 16280

Title: d(GAGCTC)2 assignments   PubMed: 20090983

Authors: Waywell, Phil; Thomas, James

Citation: Waywell, Philip; Thomas, James; Williamson, Mike. "Structural analysis of the binding of the diquaternary pyridophenazine derivative dqdppn to B-DNA oligonucleotides."  Org. Biomol. Chem. 8, 648-654 (2010).

Assembly members:
d(GAGCTC)2, polymer, 6 residues, Formula weight is not available

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
d(GAGCTC)2: GAGCTC

Data sets:
Data typeCount
1H chemical shifts35

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1d(GAGCTC),11
2d(GAGCTC),21

Entities:

Entity 1, d(GAGCTC),1 6 residues - Formula weight is not available

1   DGDADGDCDTDC

Samples:

sample_1: d(GAGCTC)2 2 mM; D2O 100%

sample_conditions_1: pH: 7; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D DQF-COSYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1

Software:

FELIX, Accelrys Software Inc. - chemical shift assignment, processing

NMR spectrometers:

  • Bruker Avance 500 MHz
  • Bruker Avance 800 MHz

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