BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 20125

Title: DPC micelle bound VK22   PubMed: 20933496

Authors: Bhattacharjya, Surajit; Saravanan, Rathi

Citation: Saravanan, Rathi; Bhattacharjya, Surajit. "Oligomeric structure of a cathelicidin antimicrobial peptide in dodecylphosphocholine micelle determined by NMR spectroscopy."  Biochim. Biophys. Acta 1808, 369-381 (2011).

Assembly members:
VK22, polymer, 22 residues, Formula weight is not available

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
VK22: VWPLVIRTVIAGYNLYRAIK KK

Data sets:
Data typeCount
1H chemical shifts116

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1DPCmicelle bound VK22 chain A1
2DPCmicelle bound VK22 chain B1
3DPCmicelle bound VK22 chain C1
4DPCmicelle bound VK22 chain D1

Entities:

Entity 1, DPCmicelle bound VK22 chain A 22 residues - Formula weight is not available

1   VALTRPPROLEUVALILEARGTHRVALILE
2   ALAGLYTYRASNLEUTYRARGALAILELYS
3   LYSLYS

Samples:

sample_1: VK22 0.5 mM; H2O 90%; D2O 10%

sample_conditions_1: pH: 4.8; temperature: 315 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1

Software:

SPARKY, Goddard - peak picking

NMR spectrometers:

  • Bruker DRX 600 MHz

Related Database Links:

BMRB 15667 15979 21013
PDB
DBJ BAF75952
GB AAS99323 AAZ42399 AAZ65841 ACR22842 ADZ99028
REF NP_001001605
SP Q6QLQ5