BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 20001

Title: A novel lectin-like peptide from Odorrana grahami   PubMed: 18584053

Authors: Hong, Jing; Lin, Donghai; Lai, Ren

Citation: Li, Jianxu; Wu, Hongbing; Hong, Jing; Xu, Xueqing; Yang, Hailong; Wu, Bingxian; Wang, Yipeng; Zhu, Jianhua; Lai, Ren; Jiang, Xinguo; Lin, Donghai; Prescott, Mark; Rees, Huw. "odorranalectin is a small peptide lectin with potential for drug delivery and targeting"  PLoS ONE 3, .-. (2008).

Assembly members:
odorranalectin, polymer, 17 residues, 1888.21 Da.

Natural source:   Common Name: Yunnanfu frog   Taxonomy ID: 167935   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Odorrana grahami

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
odorranalectin: YASPKCFRYPNGVLACT

Data sets:
Data typeCount
1H chemical shifts104
coupling constants12

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1odorranalectin1

Entities:

Entity 1, odorranalectin 17 residues - 1888.21 Da.

1   TYRALASERPROLYSCYSPHEARGTYRPRO
2   ASNGLYVALLEUALACYSTHR

Samples:

sample_1: odorranalectin peptide 3 mM; sodium phosphate 20 mM; sodium chloride 100 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 100 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1

Software:

CNS v1.1, Brunger, Adams, Clore, Gros, Nilges and Read - refinement, structure solution

ARIA v2.2, Linge, O, . - chemical shift assignment

SPARKY v3.112, Goddard - chemical shift assignment

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

BMRB 15302
PDB
GB ABW34702 ADV36145