BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 19645

Title: CD79a cytosolic domain denatured   PubMed: 23667548

Authors: Rosenlow, Joakim

Citation: Isaksson, Linnea; Mayzel, Maxim; Saline, Maria; Pedersen, Anders; Rosenlow, Joakim; Brutscher, Bernhard; Karlsson, B. Goran; Orekhov, Vladislav. "Highly efficient NMR assignment of intrinsically disordered proteins: application to B- and T cell receptor domains."  PLoS ONE 8, e62947-e62947 (2013).

Assembly members:
CD79a_cyt, polymer, 63 residues, 7188.7093 Da.

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: cell free synthesis   Host organism: E. coli - cell free

Entity Sequences (FASTA):
CD79a_cyt: SLRKRWQNEKLGLDAGDEYE DENLYEGLNLDDCSMYEDIS RGLQGTYQDVGSLNIGDVQL EKP

Data sets:
Data typeCount
13C chemical shifts173
15N chemical shifts60
1H chemical shifts60

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1CD79a_cyt1

Entities:

Entity 1, CD79a_cyt 63 residues - 7188.7093 Da.

1   SERLEUARGLYSARGTRPGLNASNGLULYS
2   LEUGLYLEUASPALAGLYASPGLUTYRGLU
3   ASPGLUASNLEUTYRGLUGLYLEUASNLEU
4   ASPASPCYSSERMETTYRGLUASPILESER
5   ARGGLYLEUGLNGLYTHRTYRGLNASPVAL
6   GLYSERLEUASNILEGLYASPVALGLNLEU
7   GLULYSPRO

Samples:

Denatured: CD79a_cyt, [U-99% 13C; U-99% 15N], 200 – 300 uM; DTT 2 mM; sodium phosphate 20 mM; azide 0.02%; Complete EDTA-free 1 x; sodium chloride 150 mM; TSP 100 uM; urea 6 M; H2O 90%; D2O, [U-100% 2H], 10%

Denatured_1: pH: 7.000; pressure: 1.000 atm; temperature: 288.000 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCDenaturedisotropicDenatured_1
3D HN(ca)CODenaturedisotropicDenatured_1
3D HNCADenaturedisotropicDenatured_1
3D HNCACBDenaturedisotropicDenatured_1
3D HNCODenaturedisotropicDenatured_1
3D HN(CO)CADenaturedisotropicDenatured_1
3D HN(COCA)CBDenaturedisotropicDenatured_1

Software:

AutoAssign v2.3.0, Zimmerman, Moseley, Kulikowski and Montelione - Automatic assignment

ANALYSIS v2.2, CCPN - Spectrum analysis

MDDNMR v2.1, (MDDNMR) Orekhov, Jaravine, Mayzel, Kazimierczuk - Spectrum processing

TANSY v1.0, (MDDNMR) Mayzel, Orekhov - Spectra processing & analysis

NMRPipe vany, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - Spectrum processing

NMR spectrometers:

  • Varian UnityInova 600 MHz

Related Database Links:

UniProt P11912
BMRB 18867 19644 19648 19649 19723 19724
DBJ BAG37737
EMBL CAA31802 CAA58523
GB AAA20495 AAA57274 AAA59556 AAA59557 AAA60270
REF NP_001774 NP_067612 XP_001152742 XP_002829327 XP_003779238
SP P11912